PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235528.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 799aa    MW: 89154.6 Da    PI: 6.3591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235528.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.9e-20652748295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++ +W+++++y  ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ ++ 
  XP_008235528.1 652 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISIPMEDiGTSHVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCN 743
                     79*************************999999********7777*********777777777777.********************..555888 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +++++
  XP_008235528.1 744 KYMIR 748
                     77766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-28644757IPR015300DNA-binding pseudobarrel domain
CDDcd100152.13E-34649750No hitNo description
SuperFamilySSF1019361.12E-22650746IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.5E-20651753IPR003340B3 DNA binding domain
PROSITE profilePS5086310.207651753IPR003340B3 DNA binding domain
PfamPF023622.1E-16652747IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MKGKQVQVHH HQDLHAGDLH HHHMKDVNIP ISDGFGGGGA MEELEDQEDN LGVDPSEMWL  60
DDNDQETALL ADVNDPSIFY NDHFPPLPDF PCMSSSSSSS STPAPVKSVT SSSTSSSVSS  120
SSSAASWAIL RSDAEEDGER RQQHHHNSYN HRHQYSQADD QAVDVHALSS TASMEISQPS  180
DLGREGGAMD CMGAMETFGY MDLFESNEFF DPSSIFQSDS LLMEQFQQDD DHQQLLAPHQ  240
LQDPNEATAI IPQQEQEQEV AVRDDENNKK DDQKENKEPD DMAMVFLEWL RSNRETVSAE  300
DLRSVKIKKS TIECAARRLG GGKEAMKQLL KLVLEWVQTN HLQKRRGNSL TTKDADIVAQ  360
QQYQDPFQNP NPNTSPRVLE SNPSCSFTQT PWMAPPPHAA YDHAGGILVP TPPPPPPPAA  420
YPSMMGYIAP DQYVNGPGPY QPSPEYHHMI DSGQSTWPSS PFGMGTAHYG SFPDNNIHLA  480
PPPQHHPQAF GYGSQYQPYQ YFPLNGEHQL MRLGSSATKE ARKKRMARQR RLVSHHRHGH  540
QQQQHLNVQM PDHLLHQQHT RLVGNAGDLN CANSVPLQAN PGNWFYWPTA TAAPAMMPSI  600
TQEAAPPPPV QQMDRPASTQ AQNYSQGRSA AQERQERRQG WKSEKNLKFL LQKVLKQSDV  660
GSLGRIVLPK KEAETHLPEL EARDGISIPM EDIGTSHVWN MRYRYWPNNK SRMYLLENTG  720
DFVRANGLQE GDFIVIYSDV KCNKYMIRGV KVRQAGPKSE GNKRPGKSQR NQHANTPAGT  780
NGSSPSSVSA SASATHRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4110730.0AF411073.1 Prunus avium viviparous protein (vp1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235528.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X1
RefseqXP_008235527.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X1
RefseqXP_008235526.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X1
TrEMBLM5W5U10.0M5W5U1_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s25330.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-142B3 family protein